The pelagic habitat analysis module for ecosystem‐based fisheries science and management

We have developed a set of tools that operate within an aquatic geographic information system to improve the accessibility, and usability of remote‐sensed satellite and computer‐modeled oceanographic data for marine science and ecosystem‐based management. The tools form the Pelagic Habitat Analysis Module (PHAM), which can be applied as a modeling platform, an investigative aid in scientific research, or utilized as a decision support system for marine ecological management. Applications include fisheries, marine biology, physical and biological oceanography, and marine spatial management. The GIS provides a home for diverse data types and automated tools for downloading remote sensed and global circulation model data. Within the GIS environment, PHAM provides a framework for seamless interactive four‐dimensional visualization, for matching between disparate data types, for flexible statistic or mechanistic model development, and for dynamic application of user developed models for habitat, density, and probability predictions. Here we describe PHAM in the context of ecosystem‐based fisheries management, and present results from case study projects which guided development. In the first, an analysis of the purse seine fishery for tropical tuna in the eastern Pacific Ocean revealed oceanographic drivers of the catch distribution and the influence of climate‐driven circulation patterns on the location of fishing grounds. To support management of the Common Thresher Shark (Alopias vulpinus) in the California Current Ecosystem, a simple empirical habitat utilization model was developed and used to dynamically predict the seasonal range expansion of common thresher shark based on oceanographic conditions.     

Ecoviability for ecosystem‐based fisheries management

Reconciling food security, economic development and biodiversity conservation is a key challenge, especially in the face of the demographic transition characterizing many countries in the world. Fisheries and marine ecosystems constitute a difficult application of this bio‐economic challenge. Many experts and scientists advocate an ecosystem approach to manage marine socio‐ecosystems for their sustainability and resilience. However, the ways by which to operationalize ecosystem‐based fisheries management (EBFM) remain poorly specified. We propose a specific methodological framework—viability modelling—to do so. We show how viability modelling can be applied using four contrasted case‐studies: two small‐scale fisheries in South America and Pacific and two larger‐scale fisheries in Europe and Australia. The four fisheries are analysed using the same modelling framework, structured around a set of common methods, indicators and scenarios. The calibrated models are dynamic, multispecies and multifleet and account for various sources of uncertainty. A multicriteria evaluation is used to assess the scenarios’ outcomes over a long time horizon with different constraints based on ecological, social and economic reference points. Results show to what extent the bio‐economic and ecosystem risks associated with the adoption of status quo strategies are relatively high and challenge the implementation of EBFM. In contrast, strategies called ecoviability or co‐viability strategies, that aim at satisfying the viability constraints, reduce significantly these ecological and economic risks and promote EBFM. The gains associated with those ecoviability strategies, however, decrease with the intensity of regulations imposed on these fisheries.     

Interactions of baseflow habitat constraints: Macroinvertebrate drift,stream temperature,and physical habitat for anadromous salmon in the Calapooia River,Oregon

1. The Calapooia River in western Oregon supports a small winter steelhead trout (Oncorhynchus mykiss) population and historically supported spring Chinook salmon (Oncorhynchus tshawytscha). Early timber harvesting removed the riparian forest, and log transportation practices simplified the channel. Those disturbance legacies continue to affect fish habitat by limiting shade and channel complexity, complicating conservation efforts.
2. To evaluate juvenile salmonid rearing potential, macroinvertebrate drift, thermal regime and physical habitat were measured at eight sites in 24 km of the upper river during late summer baseflow.
3. Overall physical habitat was simple, with few functioning instream structures or pools. During the 22‐day drift study, flows declined and maximum site stream temperatures ranged from 23.1°C at the lower end to 16.4°C 24 km upstream.
4. Macroinvertebrate drift concentrations ranged from 0.7–13.7 ind. m^?3 with biomasses from 0.02–1.23 mg m^?3. Drift concentration biomass was higher upstream (P  = 0.006) than downstream and declined overall (P  < 0.001) during the study. Drift biomass was dominated by five taxon groups – Baetis tricaudatus, Calineuria californica, Hesperoperla pacifica, Simulium spp., and Chironomidae, which were 65% of total biomass. During twilight, total biomass and biomass of B. tricaudatus, Simulium spp., and Chironomidae (both larvae and adults) were higher.
5. Total drift declined dramatically over the study period owing to decreases in drift concentration and a 58% decline in discharge, greatly reducing overall drift and available food resources for juvenile‐rearing salmonids.
6. The upper catchment, both with cooler temperatures and higher food availability, provided the best conditions for juvenile anadromous salmonids to survive late summer conditions. Conservation consequences of climate change‐induced alterations in flow and temperature may further affect habitat quality for juvenile salmonids in this catchment in the coming decades.

     

Long‐term habitat loss in a lightly‐disturbed population of the Indo‐Pacific humpback dolphin,Sousa chinensis

1. Coastal and estuarine waters are important ecosystems with high primary and secondary productivity, but they are prone to the impacts of habitat loss caused by anthropogenic activities. For species exclusively inhabiting coastal and estuarine waters, such as the Indo‐Pacific humpback dolphin, Sousa chinensis , irreversible habitat loss can have dramatic implications for population viability.
2. A Landsat image database was used to determine the extent of coastal changes along the northern Beibu Gulf, where a large humpback dolphin population is found. The results were compared with the standardized sighting gradient (SPUF) determined from a questionnaire survey of fishermen and likely core habitats identified by application of a global digital elevation model.
3. Both SPUF and likely core habitat results indicated a continuous distribution of the humpback dolphin along the northern Beibu Gulf. Landsat images revealed that 129.6 km² of coastal waters were permanently lost in the past 40 years, 60 km² within the likely core habitats. Although this may be considered small, the impact of such habitat loss could be substantial in some local habitats.
4. The humpback dolphin population in the northern Beibu Gulf should be regarded as one management unit, with two or more social subunits. Immediate systematic surveys are needed to fill information gaps on true distribution range and habitat‐use patterns.
5. Habitat protection actions for dolphins in the northern Beibu Gulf should include both core and linking habitats, including enacting protected areas in core habitats, mitigating anthropogenic impacts in likely habitats, restoring both coastal waters and surrounding landscape quality, effective treatment of industrial sewage discharge, and comprehensive environmental impact assessments for the planning of coastal development projects.

     

Cattle manure and inorganic nitrogen fertilizer application effects on soil hydraulic properties and maize yield of two soils of Murewa district,Zimbabwe

This study set out to determine the effects of cattle manure and inorganic N‐fertilizer application on the hydraulic properties and maize yield of a clay and sandy soil in a smallholder farming area of Zimbabwe. Four fields classified as homefields (HF: more fertile and closer to homesteads) and outfields (OF: less fertile and further from the homesteads) were selected on clay and sandy soil. They were subjected to four treatments, control (no fertility amendment), 5, 15 and 25 t/ha cattle manure + 100 kg/ha N (as ammonium nitrate) for 7 years. A two‐way randomized complete block design was used with fertility and field type as the two factors. Clay soil hydraulic properties, which included density of macropores with a diameter >300 μm, unsaturated hydraulic conductivity, steady‐state infiltration rate, moisture retention under low suction and maize grain yield, were significantly improved (P < 0.05) by fertility management compared with the control and were generally comparable between the HF and OF. Fertility management significantly improved maize grain yield on sandy soils but did not enhance hydraulic parameters, thereby indicating poor responsiveness in structural build‐up. On the other hand, significantly different hydraulic parameters between the sandy soil HF and OF suggested effects of other factors not related to soil fertility and field type treatments. We therefore concluded that application of a high rate (25 t/ha) of cattle manure and inorganic N‐fertilizer is beneficial for fertility restoration to the degraded OFs with associated comparable hydraulic properties on HFs and OFs on clay soil, unlike on sandy soil.     

基于“3S”技术的辽宁省某尾矿库扩容工程生态影响预测与评价

以辽宁省某尾矿库为例,基于GIS技术,利用2010年的TM遥感影像及地形图,预测该尾矿库扩容后的生态影响。分析结果显示:尾矿库扩容工程对生态的影响主要体现在土地利用、植被、生态景观和地形地貌的变化4个方面。     

农业生产基地项目环境影响评价要点分析及探讨

农业生产基地项目具有影响范围大、产品服务多元化等特点，涉及行业类别较多，其环境影响评价文件也相对复杂。环境影响评价报告编制单位应充分与建设方进行沟通，熟悉项目建设内容，挖掘项目可能的产生污染的环节和设施，明确环境影响范围和环境敏感点，并对项目损益进行两方面的分析。     

Contrasting development of soil microbial community structure under no-tilled perennial and tilled cropping during early pedogenesis of a Mollisol

A range of agricultural practices influence soil microbial communities, such as tillage and organic C inputs, however such effects are largely unknown at the initial stage of soil formation. Using an eight-year field experiment established on exposed parent material (PM) of a Mollisol, our objectives were to: (1) to determine the effects of field management and soil depth on soil microbial community structure; (2) to elucidate shifts in microbial community structure in relation to PM, compared to an arable Mollisol (MO) without organic amendment; and (3) to identify the controlling factors of such changes in microbial community structure. The treatments included two no-tilled soils supporting perennial crops, and four tilled soils under the same cropping system, with or without chemical fertilization and crop residue amendment. Principal component (PC) analysis of phospholipid fatty acid (PLFA) profiles demonstrated that microbial community structures were affected by tillage and/or organic and inorganic inputs via PC1 and by land use and/or soil depth via PC2. All the field treatments were separated by PM into two groups via PC1, the tilled and the no-tilled soils, with the tilled soils more developed towards MO. The tilled soils were separated with respect to MO via PC1 associated with the differences in mineral fertilization and the quality of organic amendments, with the soils without organic amendment being more similar to MO. The separations via PC1 were principally driven by bacteria and associated with soil pH and soil C, N and P. The separations via PC2 were driven by fungi, actinomycetes and Gram (−) bacteria, and associated with soil bulk density. The separations via both PC1 and PC2 were associated with soil aggregate stability and exchangeable K, indicating the effects of weathering and soil aggregation. The results suggest that in spite of the importance of mineral fertilization and organic amendments, tillage and land-use type play a significant role in determining the nature of the development of associated soil microbial community structures at the initial stages of soil formation.     

池塘养殖尾水经稻田生态工程净化后的浮游细菌群落特征

为利用稻田生态工程对精养池塘尾水进行循环利用,采用Illumina Mi Seq第二代测序技术比较分析了稻田生态工程进出水中浮游细菌群落结构和多样性差异,以探讨稻田生态工程净化回用水中浮游细菌群落变化对池塘养殖的影响。结果显示,稻田生态工程进出水中优势浮游细菌在门水平上的组成相同,均为蓝细菌门(Cyanobacteria)、变形菌门(Proteobacteria)、放线菌门(Actinobacteria)、浮霉菌门(Planctomycetes)和拟杆菌门(Bacteroidetes)。但优势门类的相对丰度发生变化,蓝细菌门的相对丰度由进水中的46.72%显著降低至表面流出水中的41.82%和渗流出水中的34.77%;而放线菌门的相对丰度由3.90%增加至表面流出水中的5.65%和渗流出水中的6.45%。属水平上优势浮游细菌组成也相同,但微囊藻属(Microcystis)的相对丰度由0.83%显著降低至渗流出水中的0.46%(P0.05)。另外,稻田生态工程表面流出水中浮游细菌物种丰富度指数(Chao 1)显著提高,渗流出水中Shannon多样性指数显著提高,且Simpson指数显著降低(P0.05)。     

Does full protection count for the maintenance of β‐diversity patterns in marine communities? Evidence from Mediterranean fish assemblages

1. Although it is widely recognized that protection may enhance size, abundance, and diversity of fish, its effect on spatial heterogeneity of fish assemblages and species turnover is still poorly understood.
2. Here the effect of full protection within a Mediterranean marine protected area on β‐diversity patterns of fish assemblages along a depth gradient comparing a no‐take zone with multiple unprotected areas is explored. The no‐take zone showed significantly higher synecological parameters, higher β‐diversity among depths, and lower small‐scale heterogeneity of fish assemblages relative to unprotected areas.
3. Such patterns might likely depend on the high level of fishing pressure outside the no‐take zone, as also abundance‐biomass curves seemed to indicate. Results suggested that full protection could play a role in maintaining high β‐diversity, thus reducing the fragility of marine communities and ecosystems, and spatial heterogeneity may represent a reliable predictor of how management actions could provide insurance against undesirable phase shifts.